View Single Post
Old 05-28-2014, 03:27 AM   #49
GenoMax
Senior Member
 
Location: East Coast USA

Join Date: Feb 2008
Posts: 6,961
Default

Have you pre-built the index for "myref.fasta"?
Code:
$ bbmap.sh ref=/path_to_your_genome.fa
This step has to be done independently of the mapping step, AFAIK.

Last edited by GenoMax; 05-28-2014 at 03:34 AM. Reason: Deleted a part not relevant to original question
GenoMax is offline   Reply With Quote