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Old 11-24-2017, 05:01 AM   #3
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Location: East Coast USA

Join Date: Feb 2008
Posts: 6,961

@cement_head: If there are no remaining adapters then all you lost is some time. For miseq datasets you would need less than 30 min to scan/trim data with from BBMap. You can then be sure that there would be no extraneous sequences remaining in your data. Especially important if you were doing any de novo work.
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