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Old 01-04-2013, 05:36 AM   #4
Location: germany

Join Date: Apr 2010
Posts: 31

Dear community, dear sdriscoll,
I have a question which could be a related with cuffdiff.
By comparing the output from isoform_exp.diff and gene_exp.diff it looks like their is less trasnscripts which are differentially expressed than genes. This sound like counter intuitive to me as I would expect at least the same number in both cases. Could you explain that?
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