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Old 05-21-2019, 01:33 PM   #1
sannazza
Junior Member
 
Location: Argentina

Join Date: May 2019
Posts: 2
Default blast+ nt database

Hi all, I hope someone can help me!
I've downloaded and installed ncbi-blast-2.9.0+, then downloaded and decompressed the 71 files from the nt_v5 database. I followed NCBI instructions and created the paths to both the blast program and database.
However, when I try to run:

$ blastdbcmd -db database5 -info

I get the following:

BLAST Database error: No alias or index file found for nucleotide database [database5] in search path [/Users/Analia:/Users/Analia/miniconda3/bin:/Users/Analia/miniconda3/bin:/Users/Analia/miniconda3/bin:/Users/Analia/miniconda3/bin:/Users/Analia/miniconda3/bin:/Users/Analia/miniconda3/bin:/Users/Analia/miniconda3/bin:/Users/Analia/miniconda3/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/bin:/opt/X11/bin:/usr/local/ncbi/blast/bin:/Users/Analia/ncbi-blast-2.9.0+:/Users/Analia/ncbi-blast-2.9.0+:/Users/Analia/ncbi-blast-2.9.0+/bin:/Users/Analia/ncbi-blast-2.9.0+/bin:/Users/Analia/miniconda3/bin:/Users/Analia/miniconda3/bin:/Users/Analia/miniconda3/bin:/Users/Analia/miniconda3/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/bin:/opt/X11/bin:/usr/local/ncbi/blast/bin:/Users/Analia/ncbi-blast-2.9.0+:/Users/Analia/ncbi-blast-2.9.0+:/Users/Analia/ncbi-blast-2.9.0+/bin:/Users/Analia/ncbi-blast-2.9.0+/bin:/Users/Analia/ncbi-blast-2.9.0+/bin:/Users/Analia/ncbi-blast-2.9.0+/bin:/Users/Analia/ncbi-blast-2.9.0+/bin:/Users/Analia/database5:]

Can anyone tell me what am I doing wrong, please?
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