Seqanswers Leaderboard Ad

Collapse

Announcement

Collapse
No announcement yet.
X
 
  • Filter
  • Time
  • Show
Clear All
new posts

  • use of BaseSpace app for outside data

    Hi All,

    Has anyone tried to import outside work into a project in BaseSpace and then use the Apps in BaseSpace to process the data, such as tophat?

    Thanks

    Wing

  • #2
    Yes, I have tried. Did not work as of about 6 months ago.

    Comment


    • #3
      Yes. What in particular did you want to know?

      Comment


      • #4
        I am just wondering if I can take a piggy-back of the APPs in BaseSpace for analysis of, say, RNA-Seq data, which were generated outside of BaseSpace.

        Thanks

        W

        Comment


        • #5
          Originally posted by wingtec View Post
          I am just wondering if I can take a piggy-back of the APPs in BaseSpace for analysis of, say, RNA-Seq data, which were generated outside of BaseSpace.

          Thanks

          W
          I have the same question....any answers?

          Comment


          • #6
            Seems like more work than it's worth IMO. Why not use Galaxy if that's what you're looking for?

            Comment

            Latest Articles

            Collapse

            • seqadmin
              Current Approaches to Protein Sequencing
              by seqadmin


              Proteins are often described as the workhorses of the cell, and identifying their sequences is key to understanding their role in biological processes and disease. Currently, the most common technique used to determine protein sequences is mass spectrometry. While still a valuable tool, mass spectrometry faces several limitations and requires a highly experienced scientist familiar with the equipment to operate it. Additionally, other proteomic methods, like affinity assays, are constrained...
              04-04-2024, 04:25 PM
            • seqadmin
              Strategies for Sequencing Challenging Samples
              by seqadmin


              Despite advancements in sequencing platforms and related sample preparation technologies, certain sample types continue to present significant challenges that can compromise sequencing results. Pedro Echave, Senior Manager of the Global Business Segment at Revvity, explained that the success of a sequencing experiment ultimately depends on the amount and integrity of the nucleic acid template (RNA or DNA) obtained from a sample. “The better the quality of the nucleic acid isolated...
              03-22-2024, 06:39 AM

            ad_right_rmr

            Collapse

            News

            Collapse

            Topics Statistics Last Post
            Started by seqadmin, Today, 09:21 AM
            0 responses
            9 views
            0 likes
            Last Post seqadmin  
            Started by seqadmin, 04-04-2024, 09:00 AM
            0 responses
            40 views
            0 likes
            Last Post seqadmin  
            Started by seqadmin, 04-04-2024, 08:48 AM
            0 responses
            30 views
            0 likes
            Last Post seqadmin  
            Started by seqadmin, 04-01-2024, 06:45 AM
            0 responses
            48 views
            0 likes
            Last Post seqadmin  
            Working...
            X