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Old 12-16-2014, 02:35 PM   #91
I like code
Location: San Diego, CA, USA

Join Date: Sep 2009
Posts: 436

Yes, "only matching that sequence" is what I mean. So in seal if you use ambig=all then that read (hit) is added to all targets it matched (if there were multiple best matches)?

Or say...what happens when a read can match one sequence with 20 kmers and a second with 18 kmers?
/* Shawn Driscoll, Gene Expression Laboratory, Pfaff
Salk Institute for Biological Studies, La Jolla, CA, USA */
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