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Old 03-17-2015, 04:59 PM   #13
Junior Member
Location: MN

Join Date: Mar 2015
Posts: 2

Hi Brian,

I'm using the Mira assembler to assemble Illumina MiSeq reads I got from NCBI/SRA. I use "fastq-dump --split-files -F xxxx.sra" to extract the reads and get two files. Each set of paired end reads have exactly the same name, and mira needs the /1 and /2 added onto the reads and gives an error if it detects reads with the same name.

Thanks for your quick reply,
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