SEQanswers - View Single Post - Extract aligned sequence coordinates from SAM or BAM file

ishmael · 08-20-2012, 09:06 AM

I think BEDtools should also fit your demand.
1. convert the bam into bed by bam2bed
2. mergeBed.

08-20-2012, 09:06 AM	#6
ishmael Member Location: NY, US Join Date: Jul 2008 Posts: 17	I think BEDtools should also fit your demand. 1. convert the bam into bed by bam2bed 2. mergeBed.