When I try to run the BBTool randomreads with any input, I am presented with the following Java exception:
Set genScaffoldInfo=true
Exception in thread "main" java.lang.ArrayIndexOutOfBoundsException: -17
at dna.ChromosomeArray.set(ChromosomeArray.java:181)
at dna.ChromosomeArray.set(ChromosomeArray.java:165)
at dna.FastaToChromArrays2.makeNextChrom(FastaToChromArrays2.java:478)
at dna.FastaToChromArrays2.makeChroms(FastaToChromArrays2.java:345)
at dna.FastaToChromArrays2.main2(FastaToChromArrays2.java:154)
at align2.RandomReads3.writeRef(RandomReads3.java:554)
at align2.RandomReads3.main(RandomReads3.java:338)
I then have to terminate the process with ctrl+c.
This problem is not present in any other BBTool that I have used. Can anyone help with this or suggest an alternative tool for generating synthetic reads with the same level of control offered by randomreads?
Thanks in advance.
Kara
Set genScaffoldInfo=true
Exception in thread "main" java.lang.ArrayIndexOutOfBoundsException: -17
at dna.ChromosomeArray.set(ChromosomeArray.java:181)
at dna.ChromosomeArray.set(ChromosomeArray.java:165)
at dna.FastaToChromArrays2.makeNextChrom(FastaToChromArrays2.java:478)
at dna.FastaToChromArrays2.makeChroms(FastaToChromArrays2.java:345)
at dna.FastaToChromArrays2.main2(FastaToChromArrays2.java:154)
at align2.RandomReads3.writeRef(RandomReads3.java:554)
at align2.RandomReads3.main(RandomReads3.java:338)
I then have to terminate the process with ctrl+c.
This problem is not present in any other BBTool that I have used. Can anyone help with this or suggest an alternative tool for generating synthetic reads with the same level of control offered by randomreads?
Thanks in advance.
Kara
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