Hi all,
I am currently looking for a software to do alignments of short reads against other short sequences (so not the whole genome). The only problem is: I want to do a lot of these alignments. So instead of aligning Xmio reads to one big sequence, my goal is to align them against 10k (or so) very short sequences. Does anybody know a suitable software?
Regards
€: I should add that I'm not aiming on multiple sequence alignments.
I am currently looking for a software to do alignments of short reads against other short sequences (so not the whole genome). The only problem is: I want to do a lot of these alignments. So instead of aligning Xmio reads to one big sequence, my goal is to align them against 10k (or so) very short sequences. Does anybody know a suitable software?
Regards
€: I should add that I'm not aiming on multiple sequence alignments.
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