View Single Post
Old 10-26-2009, 02:41 AM   #2
steven
Senior Member
 
Location: Southern France

Join Date: Aug 2009
Posts: 269
Default

What kind of promoters? If the upstream region of all annotated genes is ok, you can get this from UCSC/Galaxy:
From http://genome.ucsc.edu , menu:Tables, clade:mammal, genome:Human, group:genes, track: UCSC known, output: bed, "send to galaxy" box thickened. Click on "get output" and on the second screen, specify your upstream region with the "Upstream by" box (for instance 2000) and click on "send to galaxy". Then from the galaxy left menu click on "Fetch Sequences", "Extract Genomic DNA", and you should get your fasta sequences.
steven is offline   Reply With Quote