Hi,
I received the following error running Varscan.
I have run the program with the same command before without any problems:
Min coverage: 8x for Normal, 6x for Tumor
Min reads2: 2
Min strands2: 1
Min var freq: 0.2
Min freq for hom: 0.75
Normal purity: 1.0
Tumor purity: 0.6
Min avg qual: 10
P-value thresh: 0.99
Somatic p-value: 0.05
Exception in thread "main" java.lang.NumberFormatException: For input string: ":###AEHDAIJ#JE(DDG4EE#EDJEEEDJ>EIFGHFGJJJI)>JHIJHFIIGC#IDI=0GH?JG#G*FJFF#.IJFFICJGCIIEEIC#DJDD##DHDD#@DCCDC@"
at java.lang.NumberFormatException.forInputString(NumberFormatException.java:65)
at java.lang.Integer.parseInt(Integer.java:492)
at java.lang.Integer.parseInt(Integer.java:527)
at net.sf.varscan.Somatic.<init>(Somatic.java:898)
at net.sf.varscan.VarScan.somatic(VarScan.java:282)
at net.sf.varscan.VarScan.main(VarScan.java:188)
any help?
Thanks
I received the following error running Varscan.
I have run the program with the same command before without any problems:
Min coverage: 8x for Normal, 6x for Tumor
Min reads2: 2
Min strands2: 1
Min var freq: 0.2
Min freq for hom: 0.75
Normal purity: 1.0
Tumor purity: 0.6
Min avg qual: 10
P-value thresh: 0.99
Somatic p-value: 0.05
Exception in thread "main" java.lang.NumberFormatException: For input string: ":###AEHDAIJ#JE(DDG4EE#EDJEEEDJ>EIFGHFGJJJI)>JHIJHFIIGC#IDI=0GH?JG#G*FJFF#.IJFFICJGCIIEEIC#DJDD##DHDD#@DCCDC@"
at java.lang.NumberFormatException.forInputString(NumberFormatException.java:65)
at java.lang.Integer.parseInt(Integer.java:492)
at java.lang.Integer.parseInt(Integer.java:527)
at net.sf.varscan.Somatic.<init>(Somatic.java:898)
at net.sf.varscan.VarScan.somatic(VarScan.java:282)
at net.sf.varscan.VarScan.main(VarScan.java:188)
any help?
Thanks
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