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Old 01-15-2010, 03:55 AM   #10
steffenp
Junior Member
 
Location: Germany

Join Date: Dec 2009
Posts: 2
Default RPKM for Tag-Seq data

Hello everyone!
My question is also related to the RPKM normalization. Is this measure suited for Tag-Seq. data, where we have only reads at the 3'end and not all over the whole transcript. My suggestion is no. What would be an adequate normalization for this kind of data?
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