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Old 10-30-2011, 09:31 PM   #1
seq_lover
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Location: Memphis

Join Date: Oct 2011
Posts: 18
Default problem with running MAQ

I downloaded the MAQ and installed it as instructed in the manual. I moved the binary files to /home/user/bin directory and then I could run the maq commands from anywhere. i already converted reference fasta to bfa and fastq to bfq. When I am trying to run the following command i get an error. ANy help is appreciated.

Code:
/home/user/bin/maq map -n 2 -e 70 -u unmap2@16000001.txt aln2@16000001.map  ref.bfa  read2@16000001.bfq 2> aln2@16000001.map.log
error:
Code:
maq: match.cc:557: int ma_match(int, char**): Assertion `fp_bfa' failed.
Aborted

Last edited by seq_lover; 10-30-2011 at 09:41 PM.
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