In trying to download files from SRA, I was directed to use part of the sratoolkit called "prefetch". There I came across the term "kart file":
What is a kart file?
Thanks.
Eric
What is a kart file?
Thanks.
Eric
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efoss@gizmod31:~/source_codes/sratoolkit.2.4.5-2-ubuntu64/bin$ ./fastq-dump -X 5 -Z SRR390728 Read 5 spots for SRR390728 Written 5 spots for SRR390728 @SRR390728.1 1 length=72 CATTCTTCACGTAGTTCTCGAGCCTTGGTTTTCAGCGATGGAGAATGACTTTGACAAGCTGAGAGAAGNTNC +SRR390728.1 1 length=72 ;;;;;;;;;;;;;;;;;;;;;;;;;;;9;;665142;;;;;;;;;;;;;;;;;;;;;;;;;;;;;96&&&&( @SRR390728.2 2 length=72 AAGTAGGTCTCGTCTGTGTTTTCTACGAGCTTGTGTTCCAGCTGACCCACTCCCTGGGTGGGGGGACTGGGT +SRR390728.2 2 length=72 ;;;;;;;;;;;;;;;;;4;;;;3;393.1+4&&5&&;;;;;;;;;;;;;;;;;;;;;<9;<;;;;;464262 @SRR390728.3 3 length=72 CCAGCCTGGCCAACAGAGTGTTACCCCGTTTTTACTTATTTATTATTATTATTTTGAGACAGAGCATTGGTC +SRR390728.3 3 length=72 -;;;8;;;;;;;,*;;';-4,44;,:&,1,4'./&19;;;;;;669;;99;;;;;-;3;2;0;+;7442&2/ @SRR390728.4 4 length=72 ATAAAATCAGGGGTGTTGGAGATGGGATGCCTATTTCTGCACACCTTGGCCTCCCAAATTGCTGGGATTACA +SRR390728.4 4 length=72 1;;;;;;,;;4;3;38;8%&,,;)*;1;;,)/%4+,;1;;);;;;;;;4;(;1;;;;24;;;;41-444//0 @SRR390728.5 5 length=72 TTAAGAAATTTTTGCTCAAACCATGCCCTAAAGGGTTCTGTAATAAATAGGGCTGGGAAAACTGGCAAGCCA +SRR390728.5 5 length=72 ;;;;;;;;;;;;;;;;;;;;;;;;;;;;;9445552;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;446662
efoss@gizmod31:~/source_codes/sratoolkit.2.4.5-2-ubuntu64/bin$ ./fastq-dump -B SRA044886 2015-03-11T19:34:36 fastq-dump.2.4.5 err: item not found while constructing within virtual database module - the path 'SRA044886' cannot be opened as database or table efoss@gizmod31:~/source_codes/sratoolkit.2.4.5-2-ubuntu64/bin$
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