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Old 12-27-2016, 11:12 PM   #8
TomHarrop
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Location: New Zealand

Join Date: Jul 2014
Posts: 20
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Thanks for the replies. Sorry about the slow response, I missed the email notification over the holidays.

You're correct, the hits are mostly less than 60 bp, not the full read. I did try megablast but I don't get any hits (well, 11 out of 1000 reads had hits, about half to insects).
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