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Old 11-29-2011, 02:20 AM   #1
Vanisha
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Location: London

Join Date: Nov 2009
Posts: 21
Default plink files to vcf conversion

Is there anyway to convert plink (.map,.ped) files back to vcf?

I originally converted vcf to plink format files using vcftools, applied some QC in plink and now want to call the QC'd variants using Annovar - however Annovar doesn't accept plink file format, or does it? I can't see on website. Any help/advice is appreciated

Cheers
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