Thread: maq merge limit
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Old 09-05-2009, 12:58 AM   #8
henry
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Location: china

Join Date: Sep 2009
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Quote:
Originally Posted by Layla View Post
Hi,

Is there a limit to the number of map files that can be merged using
./maq mapmerge? If so, is there a way to overcome this for short paired end reads?

Cheers

L
it's no problem to merge 15 map files for maq.
BWA adopted burrows-wheeler transform algorithm and many tricks to accelerate processing speed. BWA is also written by the author who coded maq. You can try BWA. it should be faster.

Last edited by henry; 09-05-2009 at 01:06 AM.
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