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Old 09-28-2009, 07:52 AM   #187
Senior Member
Location: Oakland, California

Join Date: Feb 2008
Posts: 236

Hi Ka123$,

Gerald and bustard are files produced by the Illumina Pipeline, as far as I know, and neither one should contain useful information about the origin of a fragment. Only output from an aligner can be used in the context of peak finding.

For a list of formats accepted by FindPeaks, please see the following page:

If you're having an error with Eland files, please let me know what it is, and I'll try to fix it.

The more you know, the more you know you don't know. —Aristotle
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