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Old 09-30-2009, 02:08 PM   #194
Location: MD

Join Date: Jul 2009
Posts: 27

can anyone let me know why findpeaks separatereads.jar command cannot create a log file when I use the GERALD aligned files or the bowtie aligned files?
In GERALD aligned files I indicated elandext or eland_extended as the aligner type....?

Bowtie aligned files were giving me problems to run on findpeaks to separate and sort so I am directly converting gerald files to wig files although GERALD is probably not a best choice over bowtie alignment.
Any suggestion
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