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Old 09-22-2014, 11:37 PM   #31
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Location: East Coast USA

Join Date: Feb 2008
Posts: 7,125

It appears that you must have downloaded the pre-compiled binary for OS X. In that case you do not need to "make"/compile the program. You should be able to run it directly (may need to add execute permissions to bowtie2 binary).

If you are new to command line/would like to pickup some basics of unix from this excellent resource:
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