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Old 02-15-2011, 02:51 PM   #1
12jrowley2
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Location: Utah

Join Date: Dec 2010
Posts: 14
Default Anyone Tried MISO with Posted GFF files?

I am trying out the Burge lab's MISO program for isoform analysis. I want to use the mm9 file posted on their website, but within the mm9 folder are many subfolders with different pickled GFF annotations, I can't seem to get MISO to like any of these files. Which files do I feed MISO? Anyone else have this trouble, or have better experience using their own indexed alternative events file? Anyone gotten MISO to work?
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