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Old 02-15-2011, 10:53 PM   #3
Location: Utah

Join Date: Dec 2010
Posts: 14
Default Miso

good to hear it is working for you - did you run it using the TandemUTR or A3SS/A5SS indexes? for the input file I navigate to the mm9_alt_events/home/yarden/sugarman/gff-events/mm9/pickled/TandemUTR folder -within that folder are the .shelve file and the individual chromosome folders containing pickle files. Trying to run from this folder gives me errors. What do I use as my input file? gives me an OK. Do I need to prepare the pickled files?
thanks, any help is appreciated.
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