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Old 09-28-2011, 12:25 PM   #5
rworthi
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Location: St. Louis, MO

Join Date: May 2011
Posts: 14
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excellent! bow tie is purring away building the sam file. Thanks so much!

What splice mapper program(s) would you recommend, and is there anything I can use to recalibrate quality scores on these Illumina reads (these are exome capture reads from gDNA, not RNA-seq)? Stampy does not seem to work so far.
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Professor of Pharmaceutical Sciences at Southern Illinois University. Subject of the Personal Genomes Project with CGI genome sequencing, funded by a university seed grant. Annotated human and mouse genomes at the Washington University (St. Louis) GSC during Bob Waterston's tenure. Worked in nematode gene discovery at Divergence, Inc. Recent NSF grant in yeast recombinant genetics. Teach pharmacogenomics, human genomics and pharmaceutical biotechnology.

Last edited by rworthi; 09-28-2011 at 12:28 PM.
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