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Old 04-11-2018, 12:06 AM   #2
SK-N-BE
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Location: Germany

Join Date: Apr 2018
Posts: 11
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I found the mistake. It was a mistake in the command. The following is working:

kraken --db minikraken_20141208 mydata.fasta > sequences.kraken> kraken_mydata.out | kraken-report --db minikraken_20141208 kraken_mydata.out > mydata.tab
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