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Old 06-01-2015, 03:32 AM   #2
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Location: East Coast USA

Join Date: Feb 2008
Posts: 7,091

What exactly are you trying to do?

Blastn hits are probably not full length (unless the sequences are very homologous from end-to-end). I assume you are importing sequences that are full length into bioedit and then aligning them with clustalW (which is now a global alignment instead of the local in Blast). That is probably the reason why your identity matrix is not showing values closer to 1.0.
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