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Old 11-01-2010, 09:03 AM   #2
RockChalkJayhawk
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Location: Rochester, MN

Join Date: Mar 2009
Posts: 191
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Quote:
Originally Posted by Jordy224 View Post
A quick question.
Using Entez database or AmiGO, How to you find all synonyms of a particular gene in other genomes without falling back on a sequence homology search.

For example. Gene psaB can also be annotated as ycf4.

In fact, I am attempting to identify protein clusters between my newly sequenced genome and the relatives using a script. So, I need to obtain a list of all synonyms.

Whats the best method, or software.
Have you tried HomoloGene?
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