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Old 11-02-2010, 05:50 PM   #3
Junior Member
Location: VA,USA

Join Date: Feb 2009
Posts: 7

I currently use the protein cluster application in NCBI
For example:

Notice there are multiple names for this single protein, and yet the proteins are homologous. This is just a fact of annotation by the authors.

It should be possible to compare genomes by protein name as in present or absent without need for time-consuming homology search.
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