View Single Post
Old 02-25-2011, 06:01 AM   #2
anna_
Member
 
Location: germany

Join Date: Dec 2010
Posts: 15
Default

Hi alex,

I just wanted to say: It seems we have very similar problems and no idea.

I didn't get your problem clearly enough, but I have a general advice:

Check all the out format options you have in tblastn and blastdbcmd? You get them by typing tblastn -help and blastdbcmd -help.

Above that there are perl scripts in the BLAST book written by Korf, Yandell and Bedell. With these you can handle your output for example get hits with higher ninety percent identity.
anna_ is offline   Reply With Quote