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Old 02-28-2011, 05:51 AM   #5
Location: USA

Join Date: Feb 2009
Posts: 15

Hey Alex,
Thats all right.

BLAST only outputs the extent that it matches to your sequences.If you want the entire sequneces from data base,the only way that I know to work around is to use -I T option which gives you the 'gi' accessions of the db sequences.
You can use these accessions to fetch out complete sequences from nr.
You could use e-utils but its little complicated for a biginner you could copy paste the space delimited gi accessions within the search bar and get the sequences .

aparna is offline   Reply With Quote