Seqanswers Leaderboard Ad

Collapse

Announcement

Collapse
No announcement yet.
X
 
  • Filter
  • Time
  • Show
Clear All
new posts

  • Error FishingCNV_2.1

    Hello everybody,
    hope, someone has a solution for the following problem:

    I want to establish FishingCNV for analysis of CNVs in exomic data. All the pipeline runs good so far unless the last step. When typing

    Code:
    Rscript FishingCNV.R -c controls.ctr.complete -v -s ./sample.rpkm  -o ./ -pca
    I get the following warnings and execution is halted:

    Error occured in plotting function. Program will proceed without the offending plot.
    Execution halted.
    R is properly installed (v3.2.3) as is the DNAcopy package.
    The problem seems to be something with the sample file.

    Has anbody have an idea?

    Best

  • #2
    Hello everybody,
    I figured out what the problem was. Maybe it will be interesting to others:

    The plotting command halted due to too low sample number in pooled control.rpkm. The problem was the control, not the sample.

    Best

    Comment

    Latest Articles

    Collapse

    • seqadmin
      Strategies for Sequencing Challenging Samples
      by seqadmin


      Despite advancements in sequencing platforms and related sample preparation technologies, certain sample types continue to present significant challenges that can compromise sequencing results. Pedro Echave, Senior Manager of the Global Business Segment at Revvity, explained that the success of a sequencing experiment ultimately depends on the amount and integrity of the nucleic acid template (RNA or DNA) obtained from a sample. “The better the quality of the nucleic acid isolated...
      03-22-2024, 06:39 AM
    • seqadmin
      Techniques and Challenges in Conservation Genomics
      by seqadmin



      The field of conservation genomics centers on applying genomics technologies in support of conservation efforts and the preservation of biodiversity. This article features interviews with two researchers who showcase their innovative work and highlight the current state and future of conservation genomics.

      Avian Conservation
      Matthew DeSaix, a recent doctoral graduate from Kristen Ruegg’s lab at The University of Colorado, shared that most of his research...
      03-08-2024, 10:41 AM

    ad_right_rmr

    Collapse

    News

    Collapse

    Topics Statistics Last Post
    Started by seqadmin, 03-27-2024, 06:37 PM
    0 responses
    12 views
    0 likes
    Last Post seqadmin  
    Started by seqadmin, 03-27-2024, 06:07 PM
    0 responses
    11 views
    0 likes
    Last Post seqadmin  
    Started by seqadmin, 03-22-2024, 10:03 AM
    0 responses
    52 views
    0 likes
    Last Post seqadmin  
    Started by seqadmin, 03-21-2024, 07:32 AM
    0 responses
    68 views
    0 likes
    Last Post seqadmin  
    Working...
    X