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Old 03-21-2014, 02:50 AM   #46
sindrle
Senior Member
 
Location: Norway

Join Date: Aug 2013
Posts: 266
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Pasted wrong sessioninfo..

# > sessionInfo()
# R version 3.0.3 (2014-03-06)
# Platform: x86_64-apple-darwin10.8.0 (64-bit)

# locale:
# [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

# attached base packages:
# [1] grid parallel stats graphics grDevices utils datasets
# [8] methods base

# other attached packages:
# [1] Rgraphviz_2.6.0
# [2] gageData_2.0.3
# [3] pathview_1.2.4
# [4] org.Hs.eg.db_2.10.1
# [5] RSQLite_0.11.4
# [6] DBI_0.2-7
# [7] KEGGgraph_1.20.0
# [8] graph_1.40.1
# [9] XML_3.95-0.2
# [10] gage_2.12.3
# [11] Rsamtools_1.14.3
# [12] Biostrings_2.30.1
# [13] TxDb.Hsapiens.UCSC.hg19.knownGene_2.10.1
# [14] GenomicFeatures_1.14.5
# [15] AnnotationDbi_1.24.0
# [16] Biobase_2.22.0
# [17] GenomicRanges_1.14.4
# [18] XVector_0.2.0
# [19] IRanges_1.20.7
# [20] BiocGenerics_0.8.0

# loaded via a namespace (and not attached):
# [1] biomaRt_2.18.0 bitops_1.0-6 BSgenome_1.30.0
# [4] digest_0.6.4 httr_0.2 KEGGREST_1.2.0
# [7] png_0.1-7 RCurl_1.95-4.1 rtracklayer_1.22.6
# [10] stats4_3.0.3 stringr_0.6.2 tools_3.0.3
# [13] zlibbioc_1.8.0


Pathview works, but I dont get colors or up/down regulated genes...
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