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Old 06-19-2010, 04:11 AM   #6
Location: India

Join Date: Jun 2010
Posts: 20

I apologize for the delay

To John:

Yeah when i type 'bowtie' on terminal, its displaying the help, so it is confirmed that bowtie is installed successfully.

To reaela :

Actually, it was the permission problem.
When i run the command being as root login it run successfully. The mistake i did was, though the bowtie executables were placed in 'bin' folder so that all user can access but the bowtie index sub directory was left in user 2 work space.
So when i was running the tophat from my user login the index directory was not getting accessed.
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