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Old 06-07-2014, 01:53 AM   #2
dpryan
Devon Ryan
 
Location: Freiburg, Germany

Join Date: Jul 2011
Posts: 3,480
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The simplest method would be to just script this in pysam (or whatever language you prefer).

BTW, you can convert the BAM file to fastq and realign that, but it's faster to just write a little python script.
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