Hi all,
I am running dindel in our server, and I keep having the following error:
Traceback (most recent call last):
File "/home/applications/dindel-1.01-python/mergeOutputPooled.py", line 620, in <module>
main(sys.argv[1:])
File "/home/applications/dindel-1.01-python/mergeOutputPooled.py", line 613, in main
processPooledGLFFiles(glfFilesFile = options.inputFiles, maxHPLen = options.maxHPLen, refFile = options.refFile, outputVCFFile = options.outputFile, doNotFilterOnFR = (not options.filterFR), filterQual = int(options.filterQual), numSamples = int(options.numSamples), numBamFiles = int(options.numBAMFiles))
File "/home/applications/dindel-1.01-python/mergeOutputPooled.py", line 277, in processPooledGLFFiles
raise NameError("GLF files are corrupt. Could not find all required columns.")
I am new to this tool, which is why I rely heavily on the manual. I followed every thing in the instructions (changing some file names as necessary), which is why I got baffled when I got the said error. Can anybody enlighten me on this?
Thanks in advance for any help!
DM
I am running dindel in our server, and I keep having the following error:
Traceback (most recent call last):
File "/home/applications/dindel-1.01-python/mergeOutputPooled.py", line 620, in <module>
main(sys.argv[1:])
File "/home/applications/dindel-1.01-python/mergeOutputPooled.py", line 613, in main
processPooledGLFFiles(glfFilesFile = options.inputFiles, maxHPLen = options.maxHPLen, refFile = options.refFile, outputVCFFile = options.outputFile, doNotFilterOnFR = (not options.filterFR), filterQual = int(options.filterQual), numSamples = int(options.numSamples), numBamFiles = int(options.numBAMFiles))
File "/home/applications/dindel-1.01-python/mergeOutputPooled.py", line 277, in processPooledGLFFiles
raise NameError("GLF files are corrupt. Could not find all required columns.")
I am new to this tool, which is why I rely heavily on the manual. I followed every thing in the instructions (changing some file names as necessary), which is why I got baffled when I got the said error. Can anybody enlighten me on this?
Thanks in advance for any help!
DM
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