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Old 06-16-2010, 12:21 PM   #4
Location: Toronto

Join Date: Jan 2008
Posts: 30

Any one had experience comparing SICER and CCAT? I have a data set that returned >1000 peaks H3K27me3 in SICER default setting (FDR 1e-3), but no peaks in CCAT. This data set seems poorly enriched in CHIP step. But still want to pull out some reliable peaks from it.
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