Hello.
So for a specific trimmomatic run, I have the following output and I wish to compare this information with FastQC
Input Read Pairs: 39100817 Both Surviving: 15397090 (39.38%) Forward Only Surviving: 12799520 (32.73%) Reverse Only Surviving: 548505 (1.40%) Dropped: 10355702 (26.48%)
where my FastQC report shows that my total input reads is
39100817, and after trimming the QC report shows 15397090
So if I take the difference between these I get 23703727
however this does not match the Dropped 10355702 from trimmomatic.
So what is this Dropped output mean?
So for a specific trimmomatic run, I have the following output and I wish to compare this information with FastQC
Input Read Pairs: 39100817 Both Surviving: 15397090 (39.38%) Forward Only Surviving: 12799520 (32.73%) Reverse Only Surviving: 548505 (1.40%) Dropped: 10355702 (26.48%)
where my FastQC report shows that my total input reads is
39100817, and after trimming the QC report shows 15397090
So if I take the difference between these I get 23703727
however this does not match the Dropped 10355702 from trimmomatic.
So what is this Dropped output mean?
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