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Old 10-25-2010, 10:03 AM   #5
unagaswamy
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Location: Texas

Join Date: May 2010
Posts: 13
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Hi Experts,
Can anyone tell me how to extract the base quality from the CQ field of the BAM file? I colleague of mine mentioned that every two ASCII character corresponds to the SOLiD color space. Do I take the average of every overlapping 2 or the max? Any input in this regard is gretaly appreciated!
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