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Old 10-28-2010, 07:11 AM   #7
unagaswamy
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Location: Texas

Join Date: May 2010
Posts: 13
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Hi nilshomer,
Thanks for the reply. We are generating SAM record only for the SNP positions which does have the base quality. I am interested in the Non-SNP positions as well and hence I'm trying to calcuate the base quality for these positions from the BAM file.
-Uma
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