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Old 05-06-2017, 05:27 PM   #224
Brian Bushnell
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Location: Walnut Creek, CA

Join Date: Jan 2014
Posts: 2,695
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Haha

The syntax would be:

bbduk.sh in1=R1.fq.gz in2=R2.fq.gz loglog loglogk=31 out=stdout.fq > /dev/null/

But, you don't need to specify anything, as the default is to not print anything rather than writing to stdout, so just do this:

bbduk.sh in1=R1.fq.gz in2=R2.fq.gz loglog loglogk=31

Edit: @Genomax beat me by a minute
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