Seems like a pity why you pulled hadoop out of Goby. Any compelling reason?
Also for the Aligner portion so far it only supports BWA ?
Also for the Aligner portion so far it only supports BWA ?
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sed -e 's/^\([0-9]\+\t\|X\t\|Y\t\)/chr\1/' -e 's/^MT\t/chrM\t/' data/biomart-mouse-exons-ensembl55-genes-NCBIM37.txt >data/biomart-mouse-exons-ensembl55-genes-NCBIM37-chr-fix.txt
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