SEQanswers - View Single Post - survery: what assembler, gene prediction and gene annotation softwares do you use?

Gorbenzer · 04-19-2013, 02:57 AM

Hi everyone,
i'm going to analize some Ion Torrent metagenomic data and have read a lot of posts about different softwares but i have very limited time and can't decide what one to try first.

Anyone tryed different softwares and can say what's the best one?

Please post the ones you use so i can give them a try

I usually run assembly with MIRA and it's working excellently, expecially the last developmental version 3.9.x, so i was tinking to stick with this one for the assembly.

Any suggestion for gene prediction and gene composition analysis tools?

Thanks for the help!

04-19-2013, 02:57 AM	#1
Gorbenzer Member Location: italy Join Date: Apr 2012 Posts: 45	survery: what assembler, gene prediction and gene annotation softwares do you use? Hi everyone, i'm going to analize some Ion Torrent metagenomic data and have read a lot of posts about different softwares but i have very limited time and can't decide what one to try first. Anyone tryed different softwares and can say what's the best one? Please post the ones you use so i can give them a try I usually run assembly with MIRA and it's working excellently, expecially the last developmental version 3.9.x, so i was tinking to stick with this one for the assembly. Any suggestion for gene prediction and gene composition analysis tools? Thanks for the help! Last edited by Gorbenzer; 04-19-2013 at 05:48 AM.