Quote:
Originally Posted by rhinoceros
Something like MG-RAST? Or more like local stuff? tRNAscan, FragGeneScan, standalone blast, blat, MEGAN, mothur, etc.. it really depends on what you plan to study..
|
Local would be great, we have two servers for our analysis.
I'd like to try all the different approaces:
- Try to assembly all the data to see if i can get draft genomes of a few highly present species;
- Try to assembly all the data, predict ORFs and annotate them to obtain the gene pool of the sample;
- Try to "annotate" all the single reads to find out what genes are higly represented in the sample.
I would love to try gene prediction and annotation (including GO, EC and pathway prediction if possible) softwares specific for metagenomic analysis.
Thx for the help!