SEQanswers - View Single Post - AMY-tree: an algorithm to use whole genome SNP calling for Y chromosomal phylogenetic

vivek_ · 11-25-2013, 09:15 AM

I tried using this software on some exome data and it appears to be really slow and memory hogging.

I'd like to know if I can obtain the Y chromosome mutations listed by haplogroup in a machine parse-able format so I can check to see if I can develop a tool with a similar functionality.

11-25-2013, 09:15 AM	#2
vivek_ PhD Student Location: Denmark Join Date: Jul 2012 Posts: 164	I tried using this software on some exome data and it appears to be really slow and memory hogging. I'd like to know if I can obtain the Y chromosome mutations listed by haplogroup in a machine parse-able format so I can check to see if I can develop a tool with a similar functionality.