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Old 02-07-2014, 02:23 AM   #6
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Location: Tübingen

Join Date: Jan 2012
Posts: 9

Maybe also try running "fastqc -k 10 ..." to increase the kmer-size fastqc is looking for. That way, you get a better picture of what sequence is at the end of your reads. You most probably have to increase the java heap space for fastqc by editing the file fastqc and setting the number after -Xmx to a higher value.

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