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Old 08-07-2017, 09:11 AM   #4
GenoMax
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Location: East Coast USA

Join Date: Feb 2008
Posts: 7,080
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So your paired-end reads are interleaved? Why not use "split -n 2" to divide the original into to two parts. If you have an odd number of fastq records then using an explicit "split -l ((n+1)/2*4)" may be better (n = number of fastq records).

Last edited by GenoMax; 08-07-2017 at 09:28 AM.
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