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Old 10-22-2010, 05:14 AM   #1
ersenkavak
Junior Member
 
Location: stockholm

Join Date: Feb 2010
Posts: 2
Default Does Cufflinks support single-end and paired end data together ?

Has anybody tried Cufflinks after merging single-end and paired-end data ?
I am guessing the connectivity between exons will be a lot better this way.
However, the --library-type parameter seems to allow either single or paired.

cheers
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