SEQanswers - View Single Post - Does Cufflinks support single-end and paired end data together ?

ersenkavak · 10-22-2010, 05:14 AM

Has anybody tried Cufflinks after merging single-end and paired-end data ?
I am guessing the connectivity between exons will be a lot better this way.
However, the --library-type parameter seems to allow either single or paired.

cheers

10-22-2010, 05:14 AM	#1
ersenkavak Junior Member Location: stockholm Join Date: Feb 2010 Posts: 2	Does Cufflinks support single-end and paired end data together ? Has anybody tried Cufflinks after merging single-end and paired-end data ? I am guessing the connectivity between exons will be a lot better this way. However, the --library-type parameter seems to allow either single or paired. cheers