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Old 02-08-2011, 01:51 AM   #2
ulz_peter
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Location: Graz, Austria

Join Date: Feb 2010
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In case you've got a fasta and a qual file you could merge them to a fastq file and then clip the vector sequences with the FastX package using FastX clipper:

http://hannonlab.cshl.edu/fastx_toolkit/

That worked quite well for me for removing Tranposon DNA elements from Library prep.
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