Dear all,
I have RNA-seq data with 20 target genes and 5 reference genes (human). I don't want to map it to the whole genome because I'm only interested in those 25.
Probably, there is a way to modify (or build) an index for human so that it will include only 25 "chromosomes"? I'm just stuck in the middle of bowtie manual wandering where to look for the answer.
Thanks,
Elizabeth
I have RNA-seq data with 20 target genes and 5 reference genes (human). I don't want to map it to the whole genome because I'm only interested in those 25.
Probably, there is a way to modify (or build) an index for human so that it will include only 25 "chromosomes"? I'm just stuck in the middle of bowtie manual wandering where to look for the answer.
Thanks,
Elizabeth
Comment