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Old 02-24-2014, 04:49 AM   #2
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Location: Budapest

Join Date: Mar 2010
Posts: 329

I am prefer the genome mapping, because I can check annotation errors. However, some species does not have assembled genome, only contigs. I this case maybe the transcriptome is a better choice. On the other hand transcriptome some times smaller than the genome, so if you do not have enough computer power, you can choose transcriptome.
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